EC2 Setup

EC2 Setup (Performed using Ubuntu Oneiric Ocelot)

1. Search AMI from list of Ubuntu AMIs (e.g. oneiric 64 east): http://cloud.ubuntu.com/ami/
2. click on desired AMI ID -> will open in AWS console
3. select your desired instance size and security (e.g. large instance and HTTP/SSH open)
4. Define keypair, launch instance and log in
5. Install the required software

  sudo apt-get update
  sudo apt-get install r-base-core
  sudo apt-get install python-scipy
  sudo apt-get install python-rpy2
  sudo apt-get install python-beautifulsoup
  sudo apt-get install python-mysqldb
  sudo apt-get install git
  sudo apt-get install openjdk-7-jre-headless
  sudo apt-get install git

Download MEME suite (see notes about MEME), note that MEME requires csh in order to run:

  sudo apt-get install csh

Get cmonkey-python:

  git clone https://github.com/weiju/cmonkey-python.git
  cd cmonkey-python
  ./run_tests.sh

If you want to use the Cluster Viewer:

  sudo apt-get install openjdk-7-jre-headless
  sudo apt-get install openjdk-7-jdk
  wget http://download.playframework.org/releases/play-2.0-RC3.zip
  unzip play-2.0-RC3.zip

Set your PATH to include play-2.0-RC3.zip