Update Literature #307
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Update Literature #307
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hdashnow
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Dec 5, 2025
## Description The PubMed queries kept failing and I was struggling to debug them. I switched to using rentrez only instead of easyPubMed and things appear to be working now. I also changed the way the queries are created to make it a bit easier to read. @laurelhiatt did I mess any of the logic up? Here is the the latest Literature Update using this script (to check the output): #307 ## Major Changes - change get-literature.R to use rentrez only instead of easyPubMed ## Minor Changes - Reformat queries ## Checklist - [x] All changes are well summarized - [x] Check all tests pass - [ ] Check that the website preview looks good - [ ] Update the STRchive version in `CITATION.cff`, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X. - [x] Ask someone to review this PR
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Description
This PR introduces changes from automated literature retrieval followed by manual curation.
Fixes: # Link to any relevant issues and/or discussions
Major Changes
Minor Changes
Checklist
STRchive-loci.jsonas commits to this branch/PRCITATION.cff, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X.