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compute total num studies on prisma export #156

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Merged
sophiaharms merged 2 commits into from
Nov 14, 2025
Merged

compute total num studies on prisma export #156

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e50277f
add "num_studies" to prisma counts export
bdewilde Oct 26, 2025
fbc7a45
tests: update prisma export test cases
bdewilde Oct 26, 2025
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4 changes: 3 additions & 1 deletion colandr/apis/resources/review_exports.py
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Original file line number Diff line number Diff line change
Expand Up @@ -60,6 +60,7 @@ def get(self, id):
is None
):
return forbidden_error(f"{current_user} forbidden to get this review")

# get counts by step, i.e. prisma
n_studies_by_source_stmt = (
sa.select(
Expand All @@ -69,11 +70,11 @@ def get(self, id):
.filter(models.Import.review_id == id)
.group_by(models.DataSource.source_type)
)

n_studies_by_source = {
row.source_type: row.sum
for row in db.session.execute(n_studies_by_source_stmt)
}
n_studies = sum(n_studies_by_source.values())

n_unique_studies = db.session.execute(
sa.select(sa.func.count()).select_from(
Expand Down Expand Up @@ -131,6 +132,7 @@ def get(self, id):
current_app.logger.debug("prisma counts exported for %s", review)

return {
"num_studies": n_studies,
"num_studies_by_source": n_studies_by_source,
"num_unique_studies": n_unique_studies,
"num_screened_citations": n_citations_screened,
Expand Down
2 changes: 2 additions & 0 deletions tests/api/test_review_exports.py
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Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ class TestReviewExportPrismaResource:
(
1,
{
"num_studies": 3,
"num_studies_by_source": {"database": 2, "gray_literature": 1},
"num_unique_studies": 3,
"num_screened_citations": 3,
Expand All @@ -25,6 +26,7 @@ class TestReviewExportPrismaResource:
(
2,
{
"num_studies": 1,
"num_studies_by_source": {"database": 1},
"num_unique_studies": 1,
"num_screened_citations": 1,
Expand Down