PaCoPrototype

Parallel Coordinates Prototype is a simple HTML web application using D3.js.

Deploy in any web content container using the following directory structure:

• index.html (can be renamed)
• data/variants.tsv
• data/samples.tsv

Schema :: data/variants.tsv

Column	Type	Description
Gene	String	Must match gene in samples.tsv
Coordinate	String	e.g. chr7:123456789
MAF(%)	Decimal	e.g. 0.01
Polyphen2 prediction	Decimal	e.g. 0.01
Gene Function	String
Minor Allele Transmitted	String
Major Allele Transmitted	String
EUR	Decimal	Admixture Ratio
ASN	Decimal	Admixture Ratio
AFA	Decimal	Admixture Ratio
AMR	Decimal	Admixture Ratio

Schema :: data/samples.tsv

Column	Type	Description
Gene	String	Must match gene in variants.tsv
SampleID	String	Accepts any number of arbitrary columns
EUR	Decimal	Admixture Ratio
ASN	Decimal	Admixture Ratio
AFA	Decimal	Admixture Ratio
AMR	Decimal	Admixture Ratio