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3 changes: 2 additions & 1 deletion examples/PaperExperiments/double-well-experiment.jl
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
include("../../src/CyclingSignatures-include-file.jl")
include("../../cycling-sigs/CyclingSignatures.jl/src/CyclingSignatures-include-file.jl")

using JLD2

Expand All @@ -11,6 +11,7 @@ Y_dw = data_doublewell[:,1:end-1]
Z_dw = mapslices(normalize, data_doublewell[:,2:end]-data_doublewell[:,1:end-1], dims=1)

ts_dw = trajectoryToTrajectorySpaceSB(Y_dw,Z_dw, boxsize_dw, sb_radius_dw, filter_missing=true,shortest_path_fix=true)
saveTrajectorySpace("double-well", ts_dw)

n = 1000
dwExperimentParams = map(i->SubsegmentSampleParameter(i,n), 10:10:1000)
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2 changes: 1 addition & 1 deletion examples/PaperExperiments/lorenz-experiment.jl
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
include("../../src/CyclingSignatures-include-file.jl")
include("../../cycling-sigs/CyclingSignatures.jl/src/CyclingSignatures-include-file.jl")

using DynamicalSystems
using JLD2
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4 changes: 2 additions & 2 deletions examples/PaperExperiments/lorenz-results.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/burkeshaw_5_3.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/burkeshaw_8_3.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/double-well.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/lorenz.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/roessler-three_4_2.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/roessler-three_5_3.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/roessler_4_2.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/roessler_5_3.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/shilnikov_15_10.jld2
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3 changes: 3 additions & 0 deletions examples/Tesis/TrajectorySpaces/shilnikov_15_9.jld2
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33 changes: 33 additions & 0 deletions examples/Tesis/Utils/experiments.jl
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@@ -0,0 +1,33 @@
function runAndSaveExperimentWithRK(name, Y, Z, r, k; t = nothing)
trajectorySpace = trajectoryToTrajectorySpaceSB(Y, Z, r, k, t_vec = t; filter_missing=true, shortest_path_fix=true)
saveTrajectorySpace("$(name)_$(r)_$(k)", trajectorySpace)

betti = getBetti(trajectorySpace)
if (betti == 0)
throw(ErrorException("betti number should be greater than 0"))
end

n = 1000
experimentParams = map(i->SubsegmentSampleParameter(i,n), 10:10:1000)

experiments = map(experimentParams) do p
RandomSubsegmentExperiment(trajectorySpace, p, r)
end

times, results = runExperimentsWithTimer(experiments)
dir_name = "examples/Tesis/"
jldsave(dir_name * "$(name)-results_$(r)_$(k).jld2", results=results, times=times)
end

function saveTrajectorySpace(name::String, ts)
dir = "examples/Tesis/TrajectorySpaces/"
filename = dir * "$(name).jld2"
@save filename ts
end

function loadTrajectorySpace(name::String)
dir = "examples/Tesis/TrajectorySpaces/"
filename = dir * "$(name).jld2"
@load filename ts
return ts
end
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