Skip to content

Modular analysis pipeline for videos of freely walking and socializing fly groups that includes keypoint tracking, behavior classification, and optogenetics-specific summary statistics and data visualization

Notifications You must be signed in to change notification settings

kristinbranson/FlyDiscoAnalysis

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

FlyDiscoAnalysis

This repo contains code for analyzing FlyDisco experiments.

Entry points that are likely to be useful to end users are FlyDiscoPipeline() and run_transfero_FlyDiscoPipeline_wrapper_on_experiment_list(). See the help documentation of those functions for more details.

To use these functions, start Matlab, cd into the root of the repository, and execute the modpath command. This will add the required folders to the Matlab path for the current Matlab session.

This software is designed to be used in conjuction with Transfero, but using Transfero is in no way a requirement.

About

Modular analysis pipeline for videos of freely walking and socializing fly groups that includes keypoint tracking, behavior classification, and optogenetics-specific summary statistics and data visualization

Topics

Resources

Stars

Watchers

Forks

Packages

No packages published

Languages