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Replacing Biopython with Biotite for better performance #291

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Replacing Biopython with Biotite for better performance #291

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19df8a2
added biotite_utils
ahmedselim2017 Aug 17, 2025
76e6057
small fixes
ahmedselim2017 Aug 18, 2025
4ab5733
replace biopython_utils with biotite_utils
ahmedselim2017 Aug 18, 2025
e8885b9
add fastpdb as a dependency
ahmedselim2017 Aug 18, 2025
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3 changes: 1 addition & 2 deletions functions/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -10,11 +10,10 @@

from .pyrosetta_utils import *
from .colabdesign_utils import *
from .biopython_utils import *
from .biotite_utils import *
from .generic_utils import *

# suppress warnings
#os.environ["SLURM_STEP_NODELIST"] = os.environ["SLURM_NODELIST"]
warnings.simplefilter(action='ignore', category=FutureWarning)
warnings.simplefilter(action='ignore', category=DeprecationWarning)
warnings.simplefilter(action='ignore', category=BiopythonWarning)
236 changes: 0 additions & 236 deletions functions/biopython_utils.py
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