Skip to content
Draft
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
65 changes: 65 additions & 0 deletions mite_data/data/ae8490a2-e48b-11f0-a1a9-8218ec668ab3.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,65 @@
{
"accession": "MITE9999999",
"status": "pending",
"comment": "(Methyl-)Lanthionine macrocycle formation relatively flexible. No ATP required for reaction.",
"changelog": [
{
"version": "1",
"date": "2025-12-29",
"contributors": [
"AAAAAAAAAAAAAAAAAAAAAAAA"
],
"reviewers": [
"BBBBBBBBBBBBBBBBBBBBBBBB"
],
"comment": "New entry."
}
],
"enzyme": {
"name": "NisC",
"description": "Lanthionine synthetase",
"references": [
"doi:10.1126/science.1121422",
"doi:10.1007/s00018-007-7171-2"
],
"databaseIds": {
"uniprot": "D9IXB8",
"genpept": "ADJ56355.1",
"mibig": "BGC0000535"
},
"cofactors": {
"inorganic": [
"Zn"
]
}
},
"reactions": [
{
"tailoring": [
"Cyclization"
],
"description": "(Methyl-)lanthionine formation between dehydrated Ser/Thr and Cys on nisin precursor peptide modified by NisB.",
"reactionSMARTS": "[#6:1]-[#6:2]-[#6:3](-[#6:5](-[#6:200](-[#7:202]-[#6:203](-[#6:206](-[#7:208]-[#6:209](-[#6:214](-[#7:216]-[#6:217](-[#6:220](-[#7:222]-[#6:223](=[#6:407]-[#6:408])-[#6:224](-[#7:226]1-[#6:230](-[#6:231](-[#7:233]-[#6:234]-[#6:235](-[#7:237]-[#6:238](-[#6:241](-[#7:243]-[#6:244](-[#6:250](-[#7:252]-[#6:253](=[#6:404]-[#6:405])-[#6:254](-[#7:256]-[#6:257]-[#6:258](-[#7:260]-[#6:261](-[#6:263](-[#7:265]-[#6:266](-[#6:271](-[#7:273]-[#6:274](-[#6:279](-[#7:281]-[#6:282]-[#6:283](-[#7:285]-[#6:286](-[#6:289](-[#7:291]-[#6:292](-[#6:297](-[#7:299]-[#6:300](-[#6:305](-[#7:307]-[#6:308](-[#6:314](-[#7:316]-[#6:317](=[#6:401]-[#6:402])-[#6:318](-[#7:320]-[#6:321](-[#6:323](-[#7:325]-[#6:326](=[#6:398]-[#6:399])-[#6:327](-[#7:329]-[#6:330](-[#6:333](-[#7:335]-[#6:336](-[#6:343](-[#7:345]-[#6:346](-[#6:349](-[#7:351]-[#6:352](-[#6:355](-[#7:357]-[#6:358](-[#6:394](-[#6:396]-[#6:397])-[#6:395])-[#6:359](-[#7:361]-[#6:362](-[#6:369](-[#7:371]-[#6:372](-[#6:391](-[#6:393])-[#6:392])-[#6:373](-[#7:375]-[#6:376](-[#6:379](-[#7:381]-[#6:382](-[#6:388](-[#8:390])=[#8:389])-[#6:383]-[#6:384]-[#6:385]-[#6:386]-[#7:387])=[#8:380])=[#6:377])=[#8:374])=[#8:370])-[#6:363]-[#6:364]2:[#7:368]:[#6:367]:[#7:366]:[#6:365]:2)=[#8:360])=[#8:356])-[#6:353]-[#8:354])=[#8:350])-[#6:347]-[#16:348])=[#8:344])-[#6:337]-[#6:338]2:[#7:342]:[#6:341]:[#7:340]:[#6:339]:2)=[#8:334])-[#6:331]-[#16:332])=[#8:328])=[#8:324])-[#6:322])=[#8:319])=[#8:315])-[#6:309]-[#6:310]-[#6:311]-[#6:312]-[#7:313])=[#8:306])-[#6:301]-[#6:302]-[#16:303]-[#6:304])=[#8:298])-[#6:293]-[#6:294](=[#8:296])-[#7:295])=[#8:290])-[#6:287]-[#16:288])=[#8:284])=[#8:280])-[#6:275]-[#6:276]-[#16:277]-[#6:278])=[#8:272])-[#6:267]-[#6:268](-[#6:269])-[#6:270])=[#8:264])-[#6:262])=[#8:259])=[#8:255])=[#8:251])-[#6:245]-[#6:246]-[#6:247]-[#6:248]-[#7:249])=[#8:242])-[#6:239]-[#16:240])=[#8:236])=[#8:232])-[#6:229]-[#6:228]-[#6:227]-1)=[#8:225])=[#8:221])-[#6:218]-[#16:219])=[#8:215])-[#6:210]-[#6:211](-[#6:213])-[#6:212])=[#8:207])=[#6:204])=[#8:201])-[#7:6]-[#6:7](-[#6:9](-[#7:12]-[#6:13](-[#6:15](=[#6:197]-[#6:198])-[#7:16]-[#6:17](-[#6:19](-[#6:193](-[#6:195]-[#6:196])-[#6:194])-[#7:20]-[#6:21](-[#6:23](-[#7:31]-[#6:32](-[#6:34]1-[#7:38](-[#6:39](-[#6:41](-[#7:44]-[#6:45](-[#6:47](-[#7:49]-[#6:50](-[#6:52]-[#7:53]-[#6:54](-[#6:56](-[#7:59]-[#6:60](-[#6:62](-[#7:67]-[#6:68](-[#6:70](-[#7:76]-[#6:77](-[#6:79](-[#7:85]-[#6:86](-[#6:88](-[#7:91]-[#6:92](-[#6:94](-[#6:190](-[#6:192])-[#6:191])-[#7:95]-[#6:96](-[#6:98](-[#7:101]-[#6:102](-[#6:104](-[#6:187](-[#6:188])-[#6:189])-[#7:105]-[#6:106](-[#6:108](-[#7:113]-[#6:114](-[#6:116](-[#7:121]-[#6:122](-[#6:124](-[#7:129]-[#6:130](-[#6:132](-[#7:137]-[#6:138](-[#6:140](-[#7:148]-[#6:149](-[#6:151](-[#7:156]-[#6:157](-[#6:159](-[#7:165]-[#6:166](-[#6:168](-[#6:184](-[#8:186])-[#6:185])-[#7:169]-[#6:170](-[#6:172](-[#7:175]-[#6:176](-[#6:178](-[#6:180]-[#6:181]-[#16:182]-[#6:183])-[#7:179])=[#8:177])-[#6:173]-[#8:174])=[#8:171])=[#8:167])-[#6:160]-[#6:161]-[#6:162]-[#6:163]-[#7:164])=[#8:158])-[#6:152]-[#6:153](-[#8:155])=[#8:154])=[#8:150])-[#6:141]-[#6:142]2:[#6:147]:[#6:146]:[#6:145]:[#6:144]:[#6:143]:2)=[#8:139])-[#6:133]-[#6:134](=[#8:136])-[#7:135])=[#8:131])-[#6:125]-[#6:126](-[#6:127])-[#6:128])=[#8:123])-[#6:117]-[#6:118](-[#8:120])=[#8:119])=[#8:115])-[#6:109]-[#6:110](-[#6:112])-[#6:111])=[#8:107])=[#8:103])-[#6:99]-[#8:100])=[#8:97])=[#8:93])-[#6:89]-[#8:90])=[#8:87])-[#6:80]-[#6:81]-[#6:82]-[#6:83]-[#7:84])=[#8:78])-[#6:71]-[#6:72]-[#6:73]-[#6:74]-[#7:75])=[#8:69])-[#6:63]-[#6:64](-[#8:66])=[#8:65])=[#8:61])-[#6:57]-[#8:58])=[#8:55])=[#8:51])-[#6:48])=[#8:46])-[#6:42]-[#8:43])=[#8:40])-[#6:37]-[#6:36]-[#6:35]-1)=[#8:33])-[#6:24]-[#6:25]-[#6:26]-[#7:27]-[#6:28](-[#7:30])=[#7:29])=[#8:22])=[#8:18])=[#8:14])=[#6:10])=[#8:8])-[#6:4]>>[#6:1]-[#6:2]-[#6:3](-[#6:5]1-[#6:200](-[#7:202]-[#6:203](-[#6:206](-[#7:208]-[#6:209](-[#6:214](-[#7:216]-[#6:217](-[#6:220](-[#7:222]-[#6:223]2-[#6:407](-[#16:240]-[#6:239]-[#6:238](-[#6:241](-[#7:243]-[#6:244](-[#6:250](-[#7:252]-[#6:253]3-[#6:404](-[#16:288]-[#6:287]-[#6:286](-[#6:289](-[#7:291]-[#6:292](-[#6:297](-[#7:299]-[#6:300](-[#6:305](-[#7:307]-[#6:308](-[#6:314](-[#7:316]-[#6:317]4-[#6:401](-[#16:332]-[#6:331]-[#6:330]5-[#6:333](-[#7:335]-[#6:336](-[#6:343](-[#7:345]-[#6:346](-[#6:349](-[#7:351]-[#6:352](-[#6:355](-[#7:357]-[#6:358](-[#6:394](-[#6:396]-[#6:397])-[#6:395])-[#6:359](-[#7:361]-[#6:362](-[#6:369](-[#7:371]-[#6:372](-[#6:391](-[#6:393])-[#6:392])-[#6:373](-[#7:375]-[#6:376](-[#6:379](-[#7:381]-[#6:382](-[#6:388](-[#8:390])=[#8:389])-[#6:383]-[#6:384]-[#6:385]-[#6:386]-[#7:387])=[#8:380])-[#6:377]-[#8])=[#8:374])=[#8:370])-[#6:363]-[#6:364]6:[#7:368]:[#6:367]:[#7:366]:[#6:365]:6)=[#8:360])=[#8:356])-[#6:353]-[#8:354])=[#8:350])-[#6:347]-[#16:348]-[#6:398](-[#6:399])-[#6:326](-[#6:327](-[#7:329]-5)=[#8:328])-[#7:325]-[#6:323](=[#8:324])-[#6:321](-[#6:322])-[#7:320]-[#6:318]-4=[#8:319])=[#8:344])-[#6:337]-[#6:338]4:[#7:342]:[#6:341]:[#7:340]:[#6:339]:4)=[#8:334])-[#6:402])=[#8:315])-[#6:309]-[#6:310]-[#6:311]-[#6:312]-[#7:313])=[#8:306])-[#6:301]-[#6:302]-[#16:303]-[#6:304])=[#8:298])-[#6:293]-[#6:294](=[#8:296])-[#7:295])=[#8:290])-[#7:285]-[#6:283](=[#8:284])-[#6:282]-[#7:281]-[#6:279](=[#8:280])-[#6:274](-[#6:275]-[#6:276]-[#16:277]-[#6:278])-[#7:273]-[#6:271](=[#8:272])-[#6:266](-[#6:267]-[#6:268](-[#6:269])-[#6:270])-[#7:265]-[#6:263](=[#8:264])-[#6:261](-[#6:262])-[#7:260]-[#6:258](=[#8:259])-[#6:257]-[#7:256]-[#6:254]-3=[#8:255])-[#6:405])=[#8:251])-[#6:245]-[#6:246]-[#6:247]-[#6:248]-[#7:249])=[#8:242])-[#7:237]-[#6:235](=[#8:236])-[#6:234]-[#7:233]-[#6:231](=[#8:232])-[#6:230]3-[#7:226](-[#6:227]-[#6:228]-[#6:229]-3)-[#6:224]-2=[#8:225])-[#6:408])=[#8:221])-[#6:218]-[#16:219]-[#6:10]-[#6:9](-[#7:12]-[#6:13](-[#6:15](=[#6:197]-[#6:198])-[#7:16]-[#6:17](-[#6:19](-[#6:193](-[#6:195]-[#6:196])-[#6:194])-[#7:20]-[#6:21](-[#6:23](-[#7:31]-[#6:32](-[#6:34]2-[#7:38](-[#6:39](-[#6:41](-[#7:44]-[#6:45](-[#6:47](-[#7:49]-[#6:50](-[#6:52]-[#7:53]-[#6:54](-[#6:56](-[#7:59]-[#6:60](-[#6:62](-[#7:67]-[#6:68](-[#6:70](-[#7:76]-[#6:77](-[#6:79](-[#7:85]-[#6:86](-[#6:88](-[#7:91]-[#6:92](-[#6:94](-[#6:190](-[#6:192])-[#6:191])-[#7:95]-[#6:96](-[#6:98](-[#7:101]-[#6:102](-[#6:104](-[#6:187](-[#6:188])-[#6:189])-[#7:105]-[#6:106](-[#6:108](-[#7:113]-[#6:114](-[#6:116](-[#7:121]-[#6:122](-[#6:124](-[#7:129]-[#6:130](-[#6:132](-[#7:137]-[#6:138](-[#6:140](-[#7:148]-[#6:149](-[#6:151](-[#7:156]-[#6:157](-[#6:159](-[#7:165]-[#6:166](-[#6:168](-[#6:184](-[#8:186])-[#6:185])-[#7:169]-[#6:170](-[#6:172](-[#7:175]-[#6:176](-[#6:178](-[#6:180]-[#6:181]-[#16:182]-[#6:183])-[#7:179])=[#8:177])-[#6:173]-[#8:174])=[#8:171])=[#8:167])-[#6:160]-[#6:161]-[#6:162]-[#6:163]-[#7:164])=[#8:158])-[#6:152]-[#6:153](-[#8:155])=[#8:154])=[#8:150])-[#6:141]-[#6:142]3:[#6:147]:[#6:146]:[#6:145]:[#6:144]:[#6:143]:3)=[#8:139])-[#6:133]-[#6:134](=[#8:136])-[#7:135])=[#8:131])-[#6:125]-[#6:126](-[#6:127])-[#6:128])=[#8:123])-[#6:117]-[#6:118](-[#8:120])=[#8:119])=[#8:115])-[#6:109]-[#6:110](-[#6:112])-[#6:111])=[#8:107])=[#8:103])-[#6:99]-[#8:100])=[#8:97])=[#8:93])-[#6:89]-[#8:90])=[#8:87])-[#6:80]-[#6:81]-[#6:82]-[#6:83]-[#7:84])=[#8:78])-[#6:71]-[#6:72]-[#6:73]-[#6:74]-[#7:75])=[#8:69])-[#6:63]-[#6:64](-[#8:66])=[#8:65])=[#8:61])-[#6:57]-[#8:58])=[#8:55])=[#8:51])-[#6:48])=[#8:46])-[#6:42]-[#8:43])=[#8:40])-[#6:37]-[#6:36]-[#6:35]-2)=[#8:33])-[#6:24]-[#6:25]-[#6:26]-[#7:27]-[#6:28](-[#7:30])=[#7:29])=[#8:22])=[#8:18])=[#8:14])-[#6:7](=[#8:8])-[#7:6]-1)=[#8:215])-[#6:210]-[#6:211](-[#6:213])-[#6:212])=[#8:207])=[#6:204])=[#8:201])-[#6:4]",
"reactions": [
{
"substrate": "C=C(NC(=O)C(NC(=O)C(Cc1c[nH]cn1)NC(=O)C(NC(=O)C(CO)NC(=O)C(CS)NC(=O)C(Cc1c[nH]cn1)NC(=O)C(CS)NC(=O)/C(=C/C)NC(=O)C(C)NC(=O)/C(=C/C)NC(=O)C(CCCCN)NC(=O)C(CCSC)NC(=O)C(CC(N)=O)NC(=O)C(CS)NC(=O)CNC(=O)C(CCSC)NC(=O)C(CC(C)C)NC(=O)C(C)NC(=O)CNC(=O)/C(=C/C)NC(=O)C(CCCCN)NC(=O)C(CS)NC(=O)CNC(=O)C1CCCN1C(=O)/C(=C/C)NC(=O)C(CS)NC(=O)C(CC(C)C)NC(=O)C(=C)NC(=O)C(NC(=O)C(=C)NC(=O)/C(=C/C)NC(=O)C(NC(=O)C(CCCNC(=N)N)NC(=O)C1CCCN1C(=O)C(CO)NC(=O)C(C)NC(=O)CNC(=O)C(CO)NC(=O)C(CC(=O)O)NC(=O)C(CCCCN)NC(=O)C(CCCCN)NC(=O)C(CO)NC(=O)C(NC(=O)C(CO)NC(=O)C(NC(=O)C(CC(C)C)NC(=O)C(CC(=O)O)NC(=O)C(CC(C)C)NC(=O)C(CC(N)=O)NC(=O)C(Cc1ccccc1)NC(=O)C(CC(=O)O)NC(=O)C(CCCCN)NC(=O)C(NC(=O)C(CO)NC(=O)C(N)CCSC)C(C)O)C(C)C)C(C)C)C(C)CC)C(C)CC)C(C)CC)C(C)C)C(=O)NC(CCCCN)C(=O)O",
"products": [
"C=C1NC(=O)C(C(C)CC)NC(=O)C(NC(=O)C(=CC)NC(=O)C(NC(=O)C(CCCNC(=N)N)NC(=O)C2CCCN2C(=O)C(CO)NC(=O)C(C)NC(=O)CNC(=O)C(CO)NC(=O)C(CC(=O)O)NC(=O)C(CCCCN)NC(=O)C(CCCCN)NC(=O)C(CO)NC(=O)C(NC(=O)C(CO)NC(=O)C(NC(=O)C(CC(C)C)NC(=O)C(CC(=O)O)NC(=O)C(CC(C)C)NC(=O)C(CC(N)=O)NC(=O)C(Cc2ccccc2)NC(=O)C(CC(=O)O)NC(=O)C(CCCCN)NC(=O)C(NC(=O)C(CO)NC(=O)C(N)CCSC)C(C)O)C(C)C)C(C)C)C(C)CC)CSCC(C(=O)NC2C(=O)N3CCCC3C(=O)NCC(=O)NC(C(=O)NC(CCCCN)C(=O)NC3C(=O)NCC(=O)NC(C)C(=O)NC(CC(C)C)C(=O)NC(CCSC)C(=O)NCC(=O)NC(C(=O)NC(CC(N)=O)C(=O)NC(CCSC)C(=O)NC(CCCCN)C(=O)NC4C(=O)NC(C)C(=O)NC5C(=O)NC(CSC4C)C(=O)NC(Cc4c[nH]cn4)C(=O)NC(C(=O)NC(CO)C(=O)NC(C(=O)NC(Cc4c[nH]cn4)C(=O)NC(C(=O)NC(CO)C(=O)NC(CCCCN)C(=O)O)C(C)C)C(C)CC)CSC5C)CSC3C)CSC2C)NC(=O)C(CC(C)C)NC1=O"
],
"isIntermediate": true,
"description": "Macrocyclisation of dehydrated nisin A precursor peptid during maturation."
}
],
"evidence": {
"evidenceCode": [
"Heterologous expression",
"In vitro assay",
"Site-directed mutagenesis"
],
"references": [
"doi:10.1126/science.1121422"
]
}
}
]
}