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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 409

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 275 135

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 304 168

Repositories

Showing 10 of 100 repositories
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data’s past year of commit activity
    Python 42 41 9 18 Updated Dec 29, 2025
  • measles Public

    Nextstrain build for measles virus

    nextstrain/measles’s past year of commit activity
    Python 3 8 4 11 Updated Dec 26, 2025
  • variant-nowcast-hub Public Forked from reichlab/variant-nowcast-hub

    A repository to store COVID-19 variant nowcasts collected as a modeling hub.

    nextstrain/variant-nowcast-hub’s past year of commit activity
    R 0 MIT 16 0 0 Updated Dec 24, 2025
  • forecasts-flu Public

    Seasonal influenza variant growth rates and frequency forecasts

    nextstrain/forecasts-flu’s past year of commit activity
    Python 1 MIT 0 2 1 Updated Dec 23, 2025
  • ebola Public

    Nextstrain build for Ebola virus

    nextstrain/ebola’s past year of commit activity
    Python 4 9 6 2 Updated Dec 23, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 56 29 33 9 Updated Dec 23, 2025
  • forecasts-viz Public
    nextstrain/forecasts-viz’s past year of commit activity
    JavaScript 2 0 6 4 Updated Dec 23, 2025
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 50 MIT 23 16 8 Updated Dec 23, 2025
  • .github Public
    nextstrain/.github’s past year of commit activity
    Shell 9 11 11 1 Updated Dec 23, 2025
  • ncov Public

    Nextstrain build for SARS-CoV-2

    nextstrain/ncov’s past year of commit activity
    Python 1,354 MIT 409 75 22 Updated Dec 23, 2025
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