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This PR fixes several issues in the code formatting. This will re-enable some features of the language server and less failure in nextflow lint .

Some issues still remain and are not fixable currently (but will be in the future)

@nvnieuwk nvnieuwk requested a review from fulaibaowang August 13, 2025 14:21
Comment on lines -139 to -142
// Export counts parameters
ec_gene_annotations,
ec_exclude_groups,

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Export counts is not implemented for now but eventually it would be still helpful to have it. Shall we keep the parameters and open an issue for reminder?

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Maybe just the issue? These unused variables give warnings while linting

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sure!

@nvnieuwk nvnieuwk merged commit e5c296e into nf-core:dev Sep 16, 2025
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@nvnieuwk nvnieuwk deleted the fix/formatting branch September 16, 2025 12:18
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2 participants