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@camlloyd camlloyd commented Oct 14, 2025

PR checklist

Closes #9194 by fixing bio-formats version in versions.yml. Also adds bio.tools ID.

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@camlloyd camlloyd requested a review from CaroAMN October 14, 2025 15:16
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CaroAMN commented Oct 15, 2025

Oh Thank you for updating it! 👍

@camlloyd camlloyd added this pull request to the merge queue Oct 15, 2025
Merged via the queue into nf-core:master with commit 1d0b875 Oct 15, 2025
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@camlloyd camlloyd deleted the raw2ometiff branch October 15, 2025 09:10
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update module: raw2ometiff

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