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FIX: Qwarp in AFNI can have NIFTI and NIFTI_GZ as extensions #3028

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Merged
merged 2 commits into from
Sep 16, 2019
Merged

FIX: Qwarp in AFNI can have NIFTI and NIFTI_GZ as extensions #3028

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9a23f55
Qwarp can have NIFTI and NIFTI_GZ as extensions
gpiantoni Apr 19, 2019
d229372
fix typo in parsing extension of out_file for Qwarp
gpiantoni Apr 19, 2019
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11 changes: 8 additions & 3 deletions nipype/interfaces/afni/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -3773,13 +3773,18 @@ def _list_outputs(self):

if not isdefined(self.inputs.out_file):
prefix = self._gen_fname(self.inputs.in_file, suffix='_QW')
ext = '.HEAD'
suffix = '+tlrc'
outputtype = self.inputs.outputtype
if outputtype == 'AFNI':
ext = '.HEAD'
suffix = '+tlrc'
else:
ext = Info.output_type_to_ext(outputtype)
suffix = ''
else:
prefix = self.inputs.out_file
ext_ind = max([
prefix.lower().rfind('.nii.gz'),
prefix.lower().rfind('.nii.')
prefix.lower().rfind('.nii')
])
if ext_ind == -1:
ext = '.HEAD'
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