Skip to content

Pull requests: pysam-developers/pysam

New pull request New
21 Open 385 Closed
21 Open 385 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

AlignedSegment.set_tag(): validate Hex values for tag type 'H'
#1366 opened Nov 8, 2025 by bentyeh Loading…
Support value_type of 'B' in get_tag_typecode()
#1365 opened Nov 8, 2025 by bentyeh Loading…
optimize performance of array_to_qualitystring
#1363 opened Oct 2, 2025 by jchorl Loading…
2
Update pysam/libchtslib.pxd to HTSlib 1.21 htslib/*.h declarations
#1362 opened Sep 27, 2025 by jmarshall Loading…
Added VariantContig and VariantMetadata documentation.
#1361 opened Sep 18, 2025 by TimD1 Loading…
Add documentation for all VariantRecord related classes
#1359 opened Sep 11, 2025 by TimD1 Loading…
1
Add VariantRecordSample documentation
#1358 opened Sep 10, 2025 by TimD1 Loading…
2
7
feat: add class to generate pileup over AlignedSegments
#1353 opened Jul 4, 2025 by nh13 • Draft
1
2
Add bespoke classes for accessing SEQ and QUAL
#1347 opened Jun 10, 2025 by jmarshall • Draft
Avoid string escaping for str(SamtoolsError)
#1345 opened Jun 4, 2025 by Fan-iX Loading…
1
Update imports to htslib/samtools/bcftools 1.22
#1343 opened Jun 2, 2025 by jmarshall Loading…
Add support for filtering rows by flags
#1337 opened Apr 27, 2025 by althonos Loading…
Speed up bcf genotype count
#1281 opened Apr 22, 2024 by astaric Loading…
MinGW version of pysam
#1274 opened Mar 28, 2024 by teepean Loading…
35
Automatically translate VariantRecord on write
#1270 opened Feb 26, 2024 by kkchau Loading…
1
Add FastxRecord to the docs
#1245 opened Nov 25, 2023 by nh13 Loading…
1
Update handling of INFO/END when writing records in VCF
#1201 opened Jun 29, 2023 by rickymagner Loading…
2
Added support for persisting IndexedReads index to disk
#1037 opened Aug 26, 2021 by Prakash2403 Loading…
[WIP] build pysam on Windows
#964 opened Nov 3, 2020 by fo40225 Loading…
4
Add with_ref and with_query args for get_aligned_pairs.
#777 opened Mar 23, 2019 by y9c Loading…
2
Implement VariantRecord#calc_number
#672 opened Apr 22, 2018 by multimeric Loading…
2
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.