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Enable git-r Integration in r-dev-env #276

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6923342
updated localscript to install git r
avinab-neogy Aug 27, 2025
f2c520d
added documentation for the git r workflow
avinab-neogy Aug 27, 2025
732b6ff
fixed linter issues
avinab-neogy Aug 27, 2025
1f9079d
removed the documentation moving it to a separate pr
avinab-neogy Aug 30, 2025
00aec78
updated mkdocs
avinab-neogy Aug 30, 2025
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63 changes: 33 additions & 30 deletions scripts/localscript.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -2,39 +2,42 @@

# This script is run after the workspace is created


local_script(){

# Workspace root is $PWD at the start
WORK_DIR=$PWD
VSCODE_DIR="$WORK_DIR/.vscode"
DEVCONTAINER_JSON="$WORK_DIR/.devcontainer/devcontainer.json"

# Create patch directory in workspace root ($PWD at start)
PATCHDIR="$WORK_DIR/patches"
mkdir -p $PATCHDIR
mkdir -p $VSCODE_DIR

# Copy the which_r and set_build_r function definitions to .bashrc
cat $WORK_DIR/scripts/which_r.sh >> ~/.bashrc
cat $WORK_DIR/scripts/set_build_r.sh >> ~/.bashrc

# Copy over the welcome message script to be run when bash terminal starts
cat $WORK_DIR/scripts/welcome_msg.sh >> ~/.bashrc

#bash ~/.bashrc

# Remove git directory if it exists
#rm -rf .git

# copying vscode extension settings from devcontainer json to vscode settings json using jq
if [ -f "$DEVCONTAINER_JSON" ]; then
# Workspace root is $PWD at the start
WORK_DIR=$PWD
VSCODE_DIR="$WORK_DIR/.vscode"
DEVCONTAINER_JSON="$WORK_DIR/.devcontainer/devcontainer.json"

# Create patch directory in workspace root ($PWD at start)
PATCHDIR="$WORK_DIR/patches"
mkdir -p "$PATCHDIR"
mkdir -p "$VSCODE_DIR"

# Copy the which_r and set_build_r function definitions to .bashrc
cat "$WORK_DIR/scripts/which_r.sh" >> ~/.bashrc
cat "$WORK_DIR/scripts/set_build_r.sh" >> ~/.bashrc

# Copy over the welcome message script to be run when bash terminal starts
cat "$WORK_DIR/scripts/welcome_msg.sh" >> ~/.bashrc

# Install git-r tool to /usr/local/bin (already on PATH)
echo "Installing git-r tool..."
curl -L -o /tmp/git-r \
https://raw.githubusercontent.com/HenrikBengtsson/git-r/master/bin/git-r

if [ $? -eq 0 ]; then
chmod +x /tmp/git-r
sudo mv /tmp/git-r /usr/local/bin/git-r
echo "git-r installed successfully to /usr/local/bin/git-r"
else
echo "Failed to download git-r"
fi

# Copy VS Code settings from devcontainer.json to .vscode/settings.json
if [ -f "$DEVCONTAINER_JSON" ]; then
jq '.customizations.vscode.settings' "$DEVCONTAINER_JSON" > "$VSCODE_DIR/settings.json"
fi


fi
}


# Run the main function
local_script