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Abbreviated exit condition in pfeature_comp.py #10

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Abbreviated exit condition in pfeature_comp.py #10

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22 changes: 5 additions & 17 deletions Standalone/pfeature_comp.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2139,24 +2139,12 @@ def readseq(file,out):
for i in range (1,len(seq)+1):
seqid.append("Seq_"+str(i))
for i in seq:
if 'B' in i:
NNAA = 'BJOUZX' # Non-natural amino acids
for j in NNAA:
if j in i
print('\nError: The input sequences contain non-natural amino acids. Kindly check the sequence.\n')
sys.exit()
if 'J' in i:
print('\nError: The input sequences contain non-natural amino acids. Kindly check the sequence.\n')
sys.exit()
if 'O' in i:
print('\nError: The input sequences contain non-natural amino acids. Kindly check the sequence.\n')
sys.exit()
if 'U' in i:
print('\nError: The input sequences contain non-natural amino acids. Kindly check the sequence.\n')
sys.exit()
if 'Z' in i:
print('\nError: The input sequences contain non-natural amino acids. Kindly check the sequence.\n')
sys.exit()
if 'X' in i:
print('\nError: The input sequences contain non-natural amino acids. Kindly check the sequence.\n')
sys.exit()
print(f'Sequence (contains {j}): {i}')
sys.exit()
df4 = pd.DataFrame(seq)
df4.to_csv(out,index=None,header=False)
##############################################################################
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