Skip to content

Update from update/software-2025-08-17 #436

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
39 changes: 39 additions & 0 deletions database/github/CIBERER/nf-CBRA-snvs/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,39 @@
{
"parser": "github",
"uid": "github/CIBERER/nf-CBRA-snvs",
"url": "https://github.com/CIBERER/nf-CBRA-snvs",
"data": {
"name": "nf-CBRA-snvs",
"url": "https://github.com/CIBERER/nf-CBRA-snvs",
"full_name": "CIBERER/nf-CBRA-snvs",
"html_url": "https://github.com/CIBERER/nf-CBRA-snvs",
"private": false,
"description": null,
"created_at": "2024-03-08T10:47:27Z",
"updated_at": "2025-08-01T13:22:00Z",
"clone_url": "https://github.com/CIBERER/nf-CBRA-snvs.git",
"homepage": null,
"size": 25253,
"stargazers_count": 0,
"watchers_count": 0,
"language": "Nextflow",
"open_issues_count": 13,
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/CIBERER",
"avatar_url": "https://avatars.githubusercontent.com/u/105356203?v=4",
"login": "CIBERER",
"type": "Organization"
},
"topics": [],
"timestamp": "2025-08-17 00:57:32.126719",
"avatar": "https://avatars.githubusercontent.com/u/105356203?v=4"
}
}
37 changes: 37 additions & 0 deletions database/github/CLINDA-AAU/simulacrumWorkflowR/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,37 @@
{
"parser": "github",
"uid": "github/CLINDA-AAU/simulacrumWorkflowR",
"url": "https://github.com/CLINDA-AAU/simulacrumWorkflowR",
"data": {
"doi": "https://doi.org/10.5281/zenodo.16787583",
"name": "simulacrumWorkflowR",
"url": "https://github.com/CLINDA-AAU/simulacrumWorkflowR",
"full_name": "CLINDA-AAU/simulacrumWorkflowR",
"html_url": "https://github.com/CLINDA-AAU/simulacrumWorkflowR",
"description": "An R library to ease the process of using Simulacrum.",
"created_at": "2024-11-01T09:40:13Z",
"updated_at": "2025-08-13T14:57:55Z",
"clone_url": "https://github.com/CLINDA-AAU/simulacrumWorkflowR.git",
"size": 4087,
"stargazers_count": 1,
"watchers_count": 1,
"language": "R",
"open_issues_count": 1,
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 4,
"owner": {
"html_url": "https://github.com/CLINDA-AAU",
"avatar_url": "https://avatars.githubusercontent.com/u/10705292?v=4",
"login": "CLINDA-AAU",
"type": "Organization"
},
"timestamp": "2025-08-17 00:57:17.312897",
"avatar": "https://avatars.githubusercontent.com/u/10705292?v=4"
}
}
36 changes: 36 additions & 0 deletions database/github/FoxFortino/ABC-SN/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,36 @@
{
"parser": "github",
"uid": "github/FoxFortino/ABC-SN",
"url": "https://github.com/FoxFortino/ABC-SN",
"data": {
"doi": [],
"title": "ABC-SN: A New Spectroscopic Supernova Classifier",
"url": "https://github.com/FoxFortino/ABC-SN",
"name": "ABC-SN",
"full_name": "FoxFortino/ABC-SN",
"html_url": "https://github.com/FoxFortino/ABC-SN",
"description": "The Attention Based Classifier for Supernovae (ABC-SN) is a neural network, inspired by the Transformer, to classify supernova into subtypes based on their spectra.",
"created_at": "2025-07-16T17:08:03Z",
"updated_at": "2025-07-31T16:54:35Z",
"clone_url": "https://github.com/FoxFortino/ABC-SN.git",
"size": 231885,
"stargazers_count": 1,
"watchers_count": 1,
"language": "Jupyter Notebook",
"license": {
"key": "agpl-3.0",
"name": "GNU Affero General Public License v3.0",
"spdx_id": "AGPL-3.0",
"url": "https://api.github.com/licenses/agpl-3.0",
"node_id": "MDc6TGljZW5zZTE="
},
"owner": {
"html_url": "https://github.com/FoxFortino",
"avatar_url": "https://avatars.githubusercontent.com/u/29548930?v=4",
"login": "FoxFortino",
"type": "User"
},
"timestamp": "2025-08-17 00:56:55.427229",
"avatar": "https://avatars.githubusercontent.com/u/29548930?v=4"
}
}
33 changes: 33 additions & 0 deletions database/github/Habiba-Eldababy/Parallel-CDM/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
{
"parser": "github",
"uid": "github/Habiba-Eldababy/Parallel-CDM",
"url": "https://github.com/Habiba-Eldababy/Parallel-CDM",
"data": {
"doi": "https://doi.org/10.5281/zenodo.16790622",
"name": "Parallel-CDM",
"url": "https://github.com/Habiba-Eldababy/Parallel-CDM",
"full_name": "Habiba-Eldababy/Parallel-CDM",
"html_url": "https://github.com/Habiba-Eldababy/Parallel-CDM",
"created_at": "2024-10-24T22:23:09Z",
"updated_at": "2025-08-13T18:57:11Z",
"clone_url": "https://github.com/Habiba-Eldababy/Parallel-CDM.git",
"size": 4888,
"language": "MATLAB",
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/Habiba-Eldababy",
"avatar_url": "https://avatars.githubusercontent.com/u/180611623?v=4",
"login": "Habiba-Eldababy",
"type": "User"
},
"timestamp": "2025-08-17 00:57:16.549044",
"avatar": "https://avatars.githubusercontent.com/u/180611623?v=4"
}
}
37 changes: 37 additions & 0 deletions database/github/HzaCode/ChemInformant/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,37 @@
{
"parser": "github",
"uid": "github/HzaCode/ChemInformant",
"url": "https://github.com/HzaCode/ChemInformant",
"data": {
"doi": "https://doi.org/10.5281/zenodo.16623785",
"name": "ChemInformant",
"url": "https://github.com/HzaCode/ChemInformant",
"full_name": "HzaCode/ChemInformant",
"html_url": "https://github.com/HzaCode/ChemInformant",
"description": "An all-in-one solution for chemical property retrieval from PubChem.",
"created_at": "2024-01-21T12:03:01Z",
"updated_at": "2025-08-13T12:10:26Z",
"clone_url": "https://github.com/HzaCode/ChemInformant.git",
"homepage": "https://hezhiang.com/ChemInformant/",
"size": 5493,
"stargazers_count": 1,
"watchers_count": 1,
"language": "Python",
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/HzaCode",
"avatar_url": "https://avatars.githubusercontent.com/u/92981090?v=4",
"login": "HzaCode",
"type": "User"
},
"timestamp": "2025-08-17 00:57:16.944292",
"avatar": "https://avatars.githubusercontent.com/u/92981090?v=4"
}
}
44 changes: 44 additions & 0 deletions database/github/JoWestermann/smolyax/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,44 @@
{
"parser": "github",
"uid": "github/JoWestermann/smolyax",
"url": "https://github.com/JoWestermann/smolyax",
"data": {
"doi": "https://doi.org/10.5281/zenodo.16860779",
"name": "smolyax",
"url": "https://github.com/JoWestermann/smolyax",
"full_name": "JoWestermann/smolyax",
"html_url": "https://github.com/JoWestermann/smolyax",
"description": "Fast high-dimensional interpolation of vector valued functions in JAX",
"created_at": "2025-01-21T21:21:52Z",
"updated_at": "2025-08-15T07:59:34Z",
"clone_url": "https://github.com/JoWestermann/smolyax.git",
"size": 4900,
"language": "Python",
"open_issues_count": 2,
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 2,
"owner": {
"html_url": "https://github.com/JoWestermann",
"avatar_url": "https://avatars.githubusercontent.com/u/91186482?v=4",
"login": "JoWestermann",
"type": "User"
},
"topics": [
"barycentric-interpolation",
"jax",
"polynomial-interpolation",
"sparse-grids",
"smolyak-operator",
"numba",
"polynomial-chaos"
],
"timestamp": "2025-08-17 00:57:13.700226",
"avatar": "https://avatars.githubusercontent.com/u/91186482?v=4"
}
}
36 changes: 36 additions & 0 deletions database/github/NikolayOskolkov/MCWorkflow/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,36 @@
{
"parser": "github",
"uid": "github/NikolayOskolkov/MCWorkflow",
"url": "https://github.com/NikolayOskolkov/MCWorkflow",
"data": {
"doi": "10.1101/2025.03.19.644176",
"name": "MCWorkflow",
"url": "https://github.com/NikolayOskolkov/MCWorkflow",
"full_name": "NikolayOskolkov/MCWorkflow",
"html_url": "https://github.com/NikolayOskolkov/MCWorkflow",
"created_at": "2025-03-07T15:53:39Z",
"updated_at": "2025-08-10T07:54:11Z",
"clone_url": "https://github.com/NikolayOskolkov/MCWorkflow.git",
"size": 29616,
"stargazers_count": 4,
"watchers_count": 4,
"language": "HTML",
"open_issues_count": 1,
"license": {
"key": "other",
"name": "Other",
"spdx_id": "NOASSERTION",
"url": null,
"node_id": "MDc6TGljZW5zZTA="
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/NikolayOskolkov",
"avatar_url": "https://avatars.githubusercontent.com/u/49948664?v=4",
"login": "NikolayOskolkov",
"type": "User"
},
"timestamp": "2025-08-17 00:57:33.294868",
"avatar": "https://avatars.githubusercontent.com/u/49948664?v=4"
}
}
33 changes: 33 additions & 0 deletions database/github/TBLabFJD/PARROT-FJD/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
{
"parser": "github",
"uid": "github/TBLabFJD/PARROT-FJD",
"url": "https://github.com/TBLabFJD/PARROT-FJD",
"data": {
"name": "PARROT-FJD",
"url": "https://github.com/TBLabFJD/PARROT-FJD",
"full_name": "TBLabFJD/PARROT-FJD",
"html_url": "https://github.com/TBLabFJD/PARROT-FJD",
"private": false,
"description": "(P)ipeline of (A)nalysis and (R)esearch of (R)are diseases (O)ptimized in (T)blab-Fundaci\u00f3n Jim\u00e9nez D\u00edaz. ",
"created_at": "2024-03-06T14:04:45Z",
"updated_at": "2025-05-21T12:22:46Z",
"clone_url": "https://github.com/TBLabFJD/PARROT-FJD.git",
"homepage": "",
"size": 60542,
"stargazers_count": 1,
"watchers_count": 1,
"language": "Perl",
"open_issues_count": 7,
"license": null,
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/TBLabFJD",
"avatar_url": "https://avatars.githubusercontent.com/u/48798983?v=4",
"login": "TBLabFJD",
"type": "User"
},
"topics": [],
"timestamp": "2025-08-17 00:57:32.949627",
"avatar": "https://avatars.githubusercontent.com/u/48798983?v=4"
}
}
39 changes: 39 additions & 0 deletions database/github/TBLabFJD/WHALE/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,39 @@
{
"parser": "github",
"uid": "github/TBLabFJD/WHALE",
"url": "https://github.com/TBLabFJD/WHALE",
"data": {
"name": "WHALE",
"url": "https://github.com/TBLabFJD/WHALE",
"full_name": "TBLabFJD/WHALE",
"html_url": "https://github.com/TBLabFJD/WHALE",
"private": false,
"description": "WHALE: (W)orkflow for (H)uman-genome (A)nalysis of (L)ong-read (E)xperiments",
"created_at": "2025-01-21T11:38:18Z",
"updated_at": "2025-01-21T11:38:19Z",
"clone_url": "https://github.com/TBLabFJD/WHALE.git",
"homepage": "",
"size": 61880,
"stargazers_count": 0,
"watchers_count": 0,
"language": null,
"open_issues_count": 0,
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 0,
"owner": {
"html_url": "https://github.com/TBLabFJD",
"avatar_url": "https://avatars.githubusercontent.com/u/48798983?v=4",
"login": "TBLabFJD",
"type": "User"
},
"topics": [],
"timestamp": "2025-08-17 00:57:32.591968",
"avatar": "https://avatars.githubusercontent.com/u/48798983?v=4"
}
}
44 changes: 44 additions & 0 deletions database/github/USEPA/MCSimMod/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,44 @@
{
"parser": "github",
"uid": "github/USEPA/MCSimMod",
"url": "https://github.com/USEPA/MCSimMod",
"data": {
"doi": "https://doi.org/10.5281/zenodo.16883665",
"name": "MCSimMod",
"url": "https://github.com/USEPA/MCSimMod",
"full_name": "USEPA/MCSimMod",
"html_url": "https://github.com/USEPA/MCSimMod",
"description": "MCSim Models in R",
"created_at": "2024-02-23T22:20:09Z",
"updated_at": "2025-08-15T19:07:40Z",
"clone_url": "https://github.com/USEPA/MCSimMod.git",
"size": 1792,
"stargazers_count": 7,
"watchers_count": 7,
"language": "C",
"open_issues_count": 2,
"license": {
"key": "gpl-3.0",
"name": "GNU General Public License v3.0",
"spdx_id": "GPL-3.0",
"url": "https://api.github.com/licenses/gpl-3.0",
"node_id": "MDc6TGljZW5zZTk="
},
"subscribers_count": 5,
"owner": {
"html_url": "https://github.com/USEPA",
"avatar_url": "https://avatars.githubusercontent.com/u/1304320?v=4",
"login": "USEPA",
"type": "Organization"
},
"topics": [
"ode-model",
"pbpk",
"pbpk-modeling",
"r",
"ode"
],
"timestamp": "2025-08-17 00:57:12.962345",
"avatar": "https://avatars.githubusercontent.com/u/1304320?v=4"
}
}
Loading