Add --merge-a3m option to colabfold_search.#769

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tomgoddard wants to merge 2 commits intosokrypton:mainfrom

Commits on Aug 30, 2025

Add --merge-a3m option to colabfold_search.
tomgoddard
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Commits on Sep 4, 2025

Made naming of unmerged .a3m files use job name. The merge code depends on options --unpack, --af3-json, --use-env-pairing, and --merge-a3m options and I haven't adequately tested the combinations…
tomgoddard
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