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@stephenslab

Stephens lab

Research in statistical and computational methods for genetics at the University of Chicago.

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  1. susieR susieR Public

    R package for "sum of single effects" regression.

    R 232 54

  2. mashr mashr Public

    An R package for multivariate adaptive shrinkage.

    R 92 21

  3. flashr flashr Public

    R package for Empirical Bayes Factor Analysis.

    R 50 11

  4. fastTopics fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    R 83 10

  5. ebnm ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    R 12 9

  6. dsc dsc Public

    Repo for Dynamic Statistical Comparisons project

    HTML 13 11

Repositories

Showing 10 of 104 repositories
  • susieR Public

    R package for "sum of single effects" regression.

    stephenslab/susieR’s past year of commit activity
    R 232 54 93 0 Updated Nov 10, 2025
  • fsusieR Public

    R package for "Sum of Single Functions" (fSuSiE) with applications to fine-mapping of molecular profiles.

    stephenslab/fsusieR’s past year of commit activity
    HTML 5 1 4 1 Updated Nov 10, 2025
  • mvsusieR Public

    A new model and algorithm for multivariate Bayesian variable selection regression.

    stephenslab/mvsusieR’s past year of commit activity
    Jupyter Notebook 22 8 25 1 Updated Nov 3, 2025
  • fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    stephenslab/fastTopics’s past year of commit activity
    R 83 10 16 1 Updated Oct 21, 2025
  • ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    stephenslab/ebnm’s past year of commit activity
    R 12 9 12 0 Updated Oct 13, 2025
  • single-cell-jamboree Public

    Exploratory analyses of single-cell data sets using different matrix factorization approaches.

    stephenslab/single-cell-jamboree’s past year of commit activity
    R 1 0 0 0 Updated Sep 12, 2025
  • fsusie-experiments Public

    Code and data for fsusie paper.

    stephenslab/fsusie-experiments’s past year of commit activity
    R 0 MIT 1 0 0 Updated Aug 19, 2025
  • singlecelljamboreeR Public

    R package supporting the analyses in the "single-cell jamboree".

    stephenslab/singlecelljamboreeR’s past year of commit activity
    R 1 0 0 0 Updated Aug 15, 2025
  • gbcd Public

    R package for generalized binary covariance decomposition.

    stephenslab/gbcd’s past year of commit activity
    R 11 2 8 0 Updated Jul 13, 2025
  • fastTopics-experiments Public

    Numerical experiments on fitting non-negative matrix factorizations and topic models.

    stephenslab/fastTopics-experiments’s past year of commit activity
    R 2 MIT 1 0 0 Updated Jul 1, 2025
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