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mkirk111 merged 1 commit into from
Dec 9, 2025
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revise: faq and methods histology #125

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1 change: 0 additions & 1 deletion content/4.pecan/1.overview/2.methods-and-data.md
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Expand Up @@ -190,7 +190,6 @@ Currently, each sample has one slide, with plans to support multiple slides per
### Data

Histological images are provided by the [COMET Blue Sky Initiative](https://www.stjude.org/research/initiatives/blue-sky.html), led by [Dr. Mike Dyer](https://www.stjude.org/directory/d/michael-dyer.html).
A large subset of COMET slides are pending publication.

::callout{icon="i-heroicons-exclamation-circle" color="green"}
**Interested in collaborating?**
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3 changes: 1 addition & 2 deletions content/4.pecan/1.overview/4.faq.md
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Expand Up @@ -68,8 +68,7 @@ However, a user can currently lasso samples in the Expression facet, gather a li

## What features are coming next?

St. Jude Cloud is working with the COMET team to enable the remaining histology slides and also develop the Epigenetic Data Facet that will comprise of Methylation data.
We are also working with the COMET team to build an image search where it will compare H&E slides with histological images in our database.
St. Jude Cloud is working with the COMET team to develop the Epigenetic Data Facet that will comprise of Methylation data.
Additionally, we are working on cohort building and sample pages.
We would love to hear your feedback and any ideas you may have for future feature developments.
If you have a feature request, please email [[email protected]](mailto:[email protected]).
2 changes: 1 addition & 1 deletion content/4.pecan/2.data-facets/4.histology.md
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Expand Up @@ -68,7 +68,7 @@ The patches that are most similar will be highlighted as "Hit Patches".
**Figure 4:**
Regions of Interest.

Regions of Interest mode allows users to select a "hit" patch and find slides with similar patches.
Regions of Interest mode allows users to select a ROI patch and find slides with similar patches.
The "hit" patch is the single patch on that result slide that is most similar to the selected patch on the original search slide, compared to the rest of the patches on the particular result slide.

![Hit Patch](/img/pecan/data-facets/histology/hit-patch.png)
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