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revise: adds CReATe dataset #84

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b4b7dc6
revise: adds CReATe dataset
haleygreenwell Oct 28, 2025
caf130d
revise:added back {target="_blank"}
haleygreenwell Oct 28, 2025
edcd368
revise: CReATe spelling additions
haleygreenwell Oct 28, 2025
396c33a
revise: added CReATe publishing
haleygreenwell Oct 29, 2025
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6 changes: 6 additions & 0 deletions .spelling
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Original file line number Diff line number Diff line change
Expand Up @@ -159,6 +159,9 @@ Zhang
Zhaoming
Zhou
# Genomics/Biology Terms
ALS-frontotemporal
ALS-FTD
amyotrophic
BAM
BamToGFF
BAMs
Expand Down Expand Up @@ -242,6 +245,7 @@ MethylationToActivity
missense
multi-omic
multi-omics
multisystem
MYCN-ATRX
Myelodysplastic
neuroblastoma
Expand All @@ -257,6 +261,7 @@ PAX5-JAK2
Paxalisib
PedAML
plotMDS
proteinopathy
ProteinPaint
proteomic
PolyA
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BMF_MDS-Schedule1
CCSS-Schedule1
ClinGen-Schedule1
CReATe-Schedule1
DMG-H3K27a-Schedule1
MBPRG-Schedule1
MBPRP-Schedule1
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39 changes: 20 additions & 19 deletions content/1.overview/3.citing-stjude-cloud.md
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Expand Up @@ -32,25 +32,26 @@ Citation manager formats can be accessed [here](https://aacrjournals.org/cancerd

Please download the Schedule 1(s) (linked in table below) to find dataset specific wording of acknowledgement(s).

| St. Jude Cloud Dataset | Publication(s) | Citation Info |
|----------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------|
| Pediatric Cancer Genome Project (PCGP) | [PCGP perspectives paper](https://www.ncbi.nlm.nih.gov/pubmed/22641210) and the [relevant tumor type paper(s)](https://permalinks.stjude.cloud/permalinks/pcgp) | [PCGP Schedule 1](/files/overview/citing-stjude-cloud/PCGP-Schedule1.pdf){target="_blank" download="PCGP-Schedule1.pdf"} |
| Childhood Solid Tumor Network (CSTN) | [CSTN Publication and Resources](https://cstn.stjude.cloud/resources) | [CSTN Schedule 1](/files/overview/citing-stjude-cloud/PCGP-Schedule1.pdf){target="_blank" download="PCGP-Schedule1.pdf"} |
| St. Jude Lifetime (SJLIFE) | [SJLIFE paper](https://www.ncbi.nlm.nih.gov/pubmed/?term=29847298) | [SJLIFE Schedule 1](/files/overview/citing-stjude-cloud/SJLIFE-Schedule1.pdf){target="_blank" download="SJLIFE-Schedule1.pdf"} |
| Clinical Pilot | [Clinical Pilot paper](https://www.ncbi.nlm.nih.gov/pubmed/30262806) | [Clinical Genomics Schedule 1](/files/overview/citing-stjude-cloud/ClinGen-Schedule1.pdf){target="_blank" download="ClinGen-Schedule1.pdf"} |
| Genomes for Kids (G4K) | [Genomes for Kids (G4K) Paper](https://aacrjournals.org/cancerdiscovery/article/11/12/3008/674726/Genomes-for-Kids-The-Scope-of-Pathogenic-Mutations) | [Clinical Genomics Schedule 1](/files/overview/citing-stjude-cloud/ClinGen-Schedule1.pdf){target="_blank" download="ClinGen-Schedule1.pdf"} |
| Real-Time Clinical Genomics (RTCG) | No publication yet | [Clinical Genomics Schedule 1](/files/overview/citing-stjude-cloud/ClinGen-Schedule1.pdf){target="_blank" download="ClinGen-Schedule1.pdf"} |
| Sickle Cell Genome Project (SGP) | Paper In Progress | [SGP Schedule 1](/files/overview/citing-stjude-cloud/SGP-Schedule1.pdf){target="_blank" download="SGP-Schedule1.pdf"} |
| Childhood Cancer Survivor Study (CCSS) | [CCSS study design paper](https://www.ncbi.nlm.nih.gov/pubmed/11920786) | [CCSS Schedule 1](/files/overview/citing-stjude-cloud/CCSS-Schedule1.pdf){target="_blank" download="CCSS-Schedule1.pdf"} |
| Pan-Acute Lymphoblastic Leukemia (PanALL) | Paper In Progress | [PanALL Schedule 1](/files/overview/citing-stjude-cloud/PanALL-Schedule1.pdf){target="_blank" download="PanALL-Schedule1.pdf"} |
| Pediatric therapy-related Myeloid Neoplasms (tMN) | [tMN paper](https://pubmed.ncbi.nlm.nih.gov/33579957/) | [tMN Schedule 1](/files/overview/citing-stjude-cloud/tMN-Schedule1.pdf){target="_blank" download="tMN-Schedule1.pdf"} |
| Pediatric Acute Myeloid Leukemia (PedAML) | [PedAML paper](https://pubmed.ncbi.nlm.nih.gov/34778799/) | [PedAML Schedule 1](/files/overview/citing-stjude-cloud/PedAML-Schedule1.pdf){target="_blank" download="PedAML-Schedule1.pdf"} |
| Bone Marrow Failure and Myelodysplastic Syndromes (BMF/MDS) | Paper In Progress | [BMF/MDS Schedule 1](/files/overview/citing-stjude-cloud/BMF_MDS-Schedule1.pdf){target="_blank" download="BMF_MDS-Schedule1.pdf"} |
| Genomics and transcriptomics of relapsed pediatric AML (RPAML) | Paper In Progress | [RPAML Schedule 1](/files/overview/citing-stjude-cloud/RPAML_Schedule1.pdf){target="_blank" download="RPAML-Schedule1.pdf"} |
| Medulloblastoma Preclinical Ribociclib and Gemcitabine (MBPRG) | Paper In Progress | [MBPRG Schedule 1](/files/overview/citing-stjude-cloud/MBPRG-Schedule1.pdf){target="_blank" download="MBPRG-Schedule1.pdf"} |
| Pediatric Brain Tumor Portal (PBTP) | [PBTP first set of PDOX models](https://pubmed.ncbi.nlm.nih.gov/32519082/), [second set of models](https://www.nature.com/articles/s41467-021-24168-8) and the [relevant tumor type paper(s)](https://permalinks.stjude.cloud/permalinks/pcgp) | [PBTP Schedule 1](/files/overview/citing-stjude-cloud/PBTP-Schedule1.pdf){target="_blank" download="PBTP-Schedule1.pdf"} |
| Medulloblastoma Preclinical Ribociclib and Paxalisib (MBPRP) | Paper In Progress | [MBPRP Schedule 1](/files/overview/citing-stjude-cloud/MBPRP-Schedule1.pdf){target="_blank" download="MBPRP-Schedule1.pdf"} |
| DMG-H3K27a Clonal Evolution (H3K27A_EVOLUTION) | [H3K27A_EVOLUTION Publication and Resources](https://permalinks.stjude.cloud/permalinks/h3k27a_evolution) | [H3K27A_EVOLUTION Schedule 1](/files/overview/citing-stjude-cloud/DMG-H3K27a-Schedule1.pdf){target="_blank" download="DMG-H3K27a-Schedule1.pdf"} |
| St. Jude Cloud Dataset | Publication(s) | Citation Info |
|------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------|
| Pediatric Cancer Genome Project (PCGP) | [PCGP perspectives paper](https://www.ncbi.nlm.nih.gov/pubmed/22641210) and the [relevant tumor type paper(s)](https://permalinks.stjude.cloud/permalinks/pcgp) | [PCGP Schedule 1](/files/overview/citing-stjude-cloud/PCGP-Schedule1.pdf){target="_blank" download="PCGP-Schedule1.pdf"} |
| Childhood Solid Tumor Network (CSTN) | [CSTN Publication and Resources](https://cstn.stjude.cloud/resources) | [CSTN Schedule 1](/files/overview/citing-stjude-cloud/PCGP-Schedule1.pdf){target="_blank" download="PCGP-Schedule1.pdf"} |
| St. Jude Lifetime (SJLIFE) | [SJLIFE paper](https://www.ncbi.nlm.nih.gov/pubmed/?term=29847298) | [SJLIFE Schedule 1](/files/overview/citing-stjude-cloud/SJLIFE-Schedule1.pdf){target="_blank" download="SJLIFE-Schedule1.pdf"} |
| Clinical Pilot | [Clinical Pilot paper](https://www.ncbi.nlm.nih.gov/pubmed/30262806) | [Clinical Genomics Schedule 1](/files/overview/citing-stjude-cloud/ClinGen-Schedule1.pdf){target="_blank" download="ClinGen-Schedule1.pdf"} |
| Genomes for Kids (G4K) | [Genomes for Kids (G4K) Paper](https://aacrjournals.org/cancerdiscovery/article/11/12/3008/674726/Genomes-for-Kids-The-Scope-of-Pathogenic-Mutations) | [Clinical Genomics Schedule 1](/files/overview/citing-stjude-cloud/ClinGen-Schedule1.pdf){target="_blank" download="ClinGen-Schedule1.pdf"} |
| Real-Time Clinical Genomics (RTCG) | No publication yet | [Clinical Genomics Schedule 1](/files/overview/citing-stjude-cloud/ClinGen-Schedule1.pdf){target="_blank" download="ClinGen-Schedule1.pdf"} |
| Sickle Cell Genome Project (SGP) | Paper In Progress | [SGP Schedule 1](/files/overview/citing-stjude-cloud/CReATe-Schedule1.pdf){target="_blank" download="SGP-Schedule1.pdf"} |
| Clinical Research in ALS and Related Disorders for Therapeutic Development Consortium (CReATe) | [CReATe study design paper](https://doi.org/10.1186/s40035-025-00516-2) | [CReATe Schedule 1](/files/overview/citing-stjude-cloud/CReATe-Schedule1.pdf){target="_blank" download="CReATe-Schedule1.pdf"} |
| Childhood Cancer Survivor Study (CCSS) | [CCSS study design paper](https://www.ncbi.nlm.nih.gov/pubmed/11920786) | [CCSS Schedule 1](/files/overview/citing-stjude-cloud/CCSS-Schedule1.pdf){target="_blank" download="CCSS-Schedule1.pdf"} |
| Pan-Acute Lymphoblastic Leukemia (PanALL) | Paper In Progress | [PanALL Schedule 1](/files/overview/citing-stjude-cloud/PanALL-Schedule1.pdf){target="_blank" download="PanALL-Schedule1.pdf"} |
| Pediatric therapy-related Myeloid Neoplasms (tMN) | [tMN paper](https://pubmed.ncbi.nlm.nih.gov/33579957/) | [tMN Schedule 1](/files/overview/citing-stjude-cloud/tMN-Schedule1.pdf){target="_blank" download="tMN-Schedule1.pdf"} |
| Pediatric Acute Myeloid Leukemia (PedAML) | [PedAML paper](https://pubmed.ncbi.nlm.nih.gov/34778799/) | [PedAML Schedule 1](/files/overview/citing-stjude-cloud/PedAML-Schedule1.pdf){target="_blank" download="PedAML-Schedule1.pdf"} |
| Bone Marrow Failure and Myelodysplastic Syndromes (BMF/MDS) | Paper In Progress | [BMF/MDS Schedule 1](/files/overview/citing-stjude-cloud/BMF_MDS-Schedule1.pdf){target="_blank" download="BMF_MDS-Schedule1.pdf"} |
| Genomics and transcriptomics of relapsed pediatric AML (RPAML) | Paper In Progress | [RPAML Schedule 1](/files/overview/citing-stjude-cloud/RPAML_Schedule1.pdf){target="_blank" download="RPAML-Schedule1.pdf"} |
| Medulloblastoma Preclinical Ribociclib and Gemcitabine (MBPRG) | Paper In Progress | [MBPRG Schedule 1](/files/overview/citing-stjude-cloud/MBPRG-Schedule1.pdf){target="_blank" download="MBPRG-Schedule1.pdf"} |
| Pediatric Brain Tumor Portal (PBTP) | [PBTP first set of PDOX models](https://pubmed.ncbi.nlm.nih.gov/32519082/), [second set of models](https://www.nature.com/articles/s41467-021-24168-8) and the [relevant tumor type paper(s)](https://permalinks.stjude.cloud/permalinks/pcgp) | [PBTP Schedule 1](/files/overview/citing-stjude-cloud/PBTP-Schedule1.pdf){target="_blank" download="PBTP-Schedule1.pdf"} |
| Medulloblastoma Preclinical Ribociclib and Paxalisib (MBPRP) | Paper In Progress | [MBPRP Schedule 1](/files/overview/citing-stjude-cloud/MBPRP-Schedule1.pdf){target="_blank" download="MBPRP-Schedule1.pdf"} |
| DMG-H3K27a Clonal Evolution (H3K27A_EVOLUTION) | [H3K27A_EVOLUTION Publication and Resources](https://permalinks.stjude.cloud/permalinks/h3k27a_evolution) | [H3K27A_EVOLUTION Schedule 1](/files/overview/citing-stjude-cloud/DMG-H3K27a-Schedule1.pdf){target="_blank" download="DMG-H3K27a-Schedule1.pdf"} |

::callout{icon="i-heroicons-document-text-solid" color="blue"}
**Note**
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