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stjudecloud / workflows Public

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Feat/methylation filtering#283

Open

adthrasher wants to merge 23 commits intomainstjudecloud/workflows:mainfrom

feat/methylation_filteringstjudecloud/workflows:feat/methylation_filteringCopy head branch name to clipboard

Conversation Commits23 (23)Checks Files changed

Open

Feat/methylation filtering#283
adthrasher wants to merge 23 commits intomainfrom
feat/methylation_filtering

Commits

Commits on Dec 9, 2025

feat: add additional probe filtering
adthrasher
committed
chore: add snps output
adthrasher
committed
chore: bump minfi docker image
adthrasher
committed
chore: update file format
adthrasher
committed
chore: remove quotes from tabular output
adthrasher
committed
chore: ruff format
adthrasher
committed
chore: lint
adthrasher
committed
chore: bump pandas
adthrasher
committed

Commits on Dec 10, 2025

chore: combine snp probe lists
adthrasher
committed
chore: lint
adthrasher
committed
chore: cleanup linked files
adthrasher
committed
chore: iterative merge of snp probe lists
adthrasher
committed

Commits on Dec 11, 2025

chore: fix argument
adthrasher
committed
chore: add probes on sex chromosomes to output
adthrasher
committed

Commits on Dec 15, 2025

chore: add high p-val probe list
adthrasher
committed
chore: print non-genomic probe list
adthrasher
committed
chore: add non-genomic probe list to task output
adthrasher
committed

Commits on Dec 16, 2025

chore: rename output
adthrasher
committed
chore: cleanup output docs and add merging of non-genomic probe lists
adthrasher
committed
chore: make output optional
adthrasher
committed
chore: make output optional
adthrasher
committed
chore: remove branch containers
adthrasher
committed
chore: update CHANGELOG
adthrasher
committed

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