Bump synapseclient from 2.5.1 to 2.6.0 in /conda/sage-bionetworks

[dependabot]

Bumps synapseclient from 2.5.1 to 2.6.0.

Release notes

Sourced from synapseclient's releases.

v2.6.0

Bug Fixes

• [SYNPY-1204] - Python 3.10 compatibility

Stories

• [SYNPY-728] - Improve error message when pandas is not available
• [SYNPY-974] - Documentation for generateManifest
• [SYNPY-1209] - Support for MaterializedViews in Py Client

Tasks

• [SYNPY-1174] - Add function to create Synapse config file
• [SYNPY-1176] - syncToSynapse aborted + silent failure of file upload
• [SYNPY-1184] - Add includeTypes to synapseutils.walk()
• [SYNPY-1189] - Document "maximumListLength" parameter for Column
• [SYNPY-1196] - Expose forceVersion on changeFileMetadata
• [SYNPY-1205] - Python 3.6 EOL - Remove support for 3.6
• [SYNPY-1212] - Include dataset as an entity type to return in getChildren()

Contributors: @​danlu1 , @​BrunoGrandePhD , @​thomasyu888

Full Changelog: Sage-Bionetworks/synapsePythonClient@v2.5.1...v2.6.0-rc

v2.6.0-rc

Bug Fixes

• [SYNPY-1204] - Python 3.10 compatibility

Stories

• [SYNPY-728] - Improve error message when pandas is not available
• [SYNPY-974] - Documentation for generateManifest
• [SYNPY-1209] - Support for MaterializedViews in Py Client

Tasks

• [SYNPY-1174] - Add function to create Synapse config file
• [SYNPY-1176] - syncToSynapse aborted + silent failure of file upload
• [SYNPY-1184] - Add includeTypes to synapseutils.walk()
• [SYNPY-1189] - Document "maximumListLength" parameter for Column
• [SYNPY-1196] - Expose forceVersion on changeFileMetadata
• [SYNPY-1205] - Python 3.6 EOL - Remove support for 3.6
• [SYNPY-1212] - Include dataset as an entity type to return in getChildren()

Contributors: @​danlu1 , @​BrunoGrandePhD , @​thomasyu888

Full Changelog: Sage-Bionetworks/synapsePythonClient@v2.5.1...v2.6.0-rc

Changelog

Sourced from synapseclient's changelog.

2.6.0 (2022-04-19)

Highlights

• Next major release (3.0.0) there will be major cosmetic changes to the cli such as removing all camel case or non-standard single dash long command line interface (cli) parameters. Example: command line arguments like -parent will become --parent. Commands that support camel case like --parentId will be changed to --parent-id.

• Added support for materialized views

  .. code-block:: bash

    # from python
    import synapseclient
    import synapseutils
    syn = synapseclient.login()
    view = MaterializedViewSchema(
        name="test-material-view",
        parent="syn34234",
        definingSQL="SELECT * FROM syn111 F JOIN syn2222 P on (F.PATIENT_ID = P.PATIENT_ID)"
    )
    view_ent = syn.store(view)
  

• Removed support for Python 3.6 and added support for Python 3.10

• Add function to create Synapse config file

  .. code-block:: bash

    # from the command line
    synapse config
  

Bug Fixes

• [SYNPY-1204 <https://sagebionetworks.jira.com/browse/SYNPY-1204>__] - Python 3.10 compatibility

Stories

• [SYNPY-728 <https://sagebionetworks.jira.com/browse/SYNPY-728>__] - Improve error message when pandas is not available
• [SYNPY-974 <https://sagebionetworks.jira.com/browse/SYNPY-974>__] - Documentation for generateManifest
• [SYNPY-1209 <https://sagebionetworks.jira.com/browse/SYNPY-1209>__] - Support for MaterializedViews in Py Client

... (truncated)

Commits

• e5d1995 Remove unused import
• 800c6fe Fix catching of module not found error
• caf962a Update documentation
• 184050a Fix docs
• b5e7243 Fix documentation syntax
• 2c096bb Update documentation
• 55bf41c SYNPY-728 imrpove pandas not found error message
• a397de1 Update walk functions
• 9a40845 Update documentation
• 00ad6fd version v2.6.0 docs
• Additional commits viewable in compare view

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[dependabot]

Superseded by #96.