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1. tskit tskit Public

   Population-scale Ancestral Recombination Graph (ARG) library

   Python 176 79

2. msprime msprime Public

   Simulate genealogical trees and genomic sequence data using population genetic models

   Python 206 89

3. tsinfer tsinfer Public

   Infer a tree sequence from genetic variation data.

   C 60 16

4. tsdate tsdate Public

   Infer the age of ancestral nodes in a tree sequence.

   Python 24 11

5. tutorials tutorials Public

   A set of tutorials for msprime and tskit.

   Jupyter Notebook 20 17

6. tszip tszip Public

   Gzip-like compression for tskit tree sequences

   Python 5 7