Make sigrap (HRDetect, MutationalPatterns) individual process #16
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This was referenced Aug 26, 2025
scwatts
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Aug 27, 2025
qclayssen
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qclayssen
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* add process and config for vcf2maf * fix path vep data * remove duplicate * fix and linting * remove params from VCF2MAF process * fix and simplify process * add meta.key to channel * add genome build as input * add dockerfile * Make sigrap (HRDetect, MutationalPatterns) individual process (#16) * remove trace of genome build and hardcode in VCF2MAF * use biocontainers container for vcf2maf * remove string interpolation * change to stub no version template * revert deleted line
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HRDetect, CHORD, MutationalPatterns were run in cancer report (gpgr) generation process.
Making individual process avoid having computation when gerating cancer report
link with (sigrap #13)[https://github.com/umccr/sigrap/pull/13]
and cancer report (gpgr #91)[https://github.com/umccr/gpgr/pull/91]