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Error code 1

Status: Open.

#2606 In Nesvilab/FragPipe;

· sudarshancftri21a-maker opened on Jan 1, 2026

Glycan FDR Control Differences Between N- and O-Glycopeptide Analysis

Status: Open.

#2599 In Nesvilab/FragPipe;

· lfu46 opened on Dec 19, 2025

Wrong quantification for extreme ratio in SILAC H/L mixtures

Status: Open.

#2593 In Nesvilab/FragPipe;

· pisistrato opened on Dec 12, 2025

write sub-mzml files for timstof data

Status: Open.

#2592 In Nesvilab/FragPipe;

· jd690764 opened on Dec 12, 2025

PTM Assignment in Combined Peptide Results

Status: Open.

#2584 In Nesvilab/FragPipe;

· KZ-MS opened on Dec 8, 2025

Metadata-aware MBR

Status: Open.

#2564 In Nesvilab/FragPipe;

· leonardblaschek opened on Nov 25, 2025

example output data

Status: Open.

#2551 In Nesvilab/FragPipe;

· mffrank opened on Nov 20, 2025

Metaproteomics module test execution problem

Status: Open.

#2541 In Nesvilab/FragPipe;

· MiguelCos opened on Nov 13, 2025

Split database causes inconsistent mapped proteins for some peptides

Status: Open.

#2524 In Nesvilab/FragPipe;

· NikolaMonteverde opened on Oct 31, 2025

O-Pair

Status: Open.

#2522 In Nesvilab/FragPipe;

· peteythecat1 opened on Oct 29, 2025

Fragpipe V23.1 crashes with DDA+ in hybrid DIA

Status: Open.

#2520 In Nesvilab/FragPipe;

· NikolaMonteverde opened on Oct 29, 2025

IonQuant can now quantify DIA data?

Status: Open.

#2512 In Nesvilab/FragPipe;

· LKittinun opened on Oct 25, 2025